Recent molecular biology Databases

Written by richa September 20, 2017

  Recently in 2017, the following new databases were added to the existing list of molecular biology databases

 

Database

URL

Brief Description

3DSNP

http://biotech.bmi.ac.cn/3dsnp/

Human non coding SNPs

AAgAtlas

http://aagatlas.ncpsb.org/

Human Auto Antigen Database

ADPriboDB

http://adpribodb.leunglab.org/

sites corresponding to ADPribosylation

antiSMASH

http://antismash-db.secondarymetabolites.org/

secondary metabolite and antibody analysis

AraPheno

https://arapheno.1001genomes.org/

Arabidopsis phenotypic data

ccNet

http://structuralbiology.cau.edu.cn/gossypium/

Diploid and polyploid Gossyium's coexpression data

CeNDR

http://www.elegansvariation.org/

Natural Diversity Resource of C. elegance

CGDB

http://cgdb.biocuckoo.org/

Circadian Gene Database

CistromeDB

http://cistrome.org/db

Mouse and Humans' chiPseq and DNAase-seq data

Coexpedia

http://www.coexpedia.org/

Gene co expression data that has been mapped to medical subject heading

dbSAP

http://www.megabionet.org/dbSAP

SNP related variation in humans

denovo-db

http://denovo-db.gs.washington.edu/

human denovo gene variants detected by Child- parent sequencing

drug Central

http://drugcentral.org/

active ingredients of approved pharma products

EURISCO

http://eurisco.ecpgr.org/

european catalogue of plant genetic resources

ExACbrowser

http://exac.broadinstitute.org/

exome consortium database

FAIRDOMHub

https://fairdomhub.org/

Findable,Accessible,Interoperable, Reusable data

fuzDB

http://protdyn-database.org/

Fuzzy Protein complexes database

GenomeCRISPR

http://genomecrispr.org/

High throughput screening using CRISPR/Cas9

GTRD

http://gtrd.biouml.org/

Gene Transcription Regulation database

Hieran oiDB

http://hieranoidb.sbc.su.se/

Ortholog groups and trees inferred by a software

IGSR

http://www.1000genomes.org/data-portal

International Genome Sample Resource

IMG/VR

https://img.jgi.doe.gov/vr/

DOE joint Genome Institute Viral Resource

JET2Viewer

http://www.lcqb.upmc.fr/jet2_viewer/

Joint Evolutionary Trees

jPOSTrepo

https://repository.jpostdb.org/

Japanese Proteome Standard Repository

KERIS

http://igenomed.org/KERIS

gene responses to inflammation among species

LinkProt

http://linkprot.cent.uw.edu.pl/

topologically complex protein structures

LNCediting

http://bioinfo.life.hust.edu.cn/LNCediting/

RNA editing sites from humans, monkeys, mouse and fly

MEGaRes

https://meg.colostate.edu/MEGaRes/

anti microbial resistance mechanisms

Membranome

http://membranome.org/

database of single-pass membrane protein

MethSMRT

http://sysbio.sysu.edu.cn/methsmrt

DNA methylation data

mirDNMR

https://www.wzgenomics.cn/mirdnmr/

background denovo mutation rates in human genes

MonarchInitiative

http://monarchinitiative.org/

human disease related genotypes and phenotype

MRPrimerV

http://infolab.dgist.ac.kr/MRPrimerV

PCR primer pairs for detection of RNA virus mediated infectious diseases

mutLBSgeneDB

http://www.zhaobioinfo.org/mutLBSgeneDB/

mutations in ligand binding sites

NSDNA

http://www.bio-bigdata.net/nsdna/

Nervous System Disease Atlas

Ontobee

http://www.ontobee.org/

ontology database

Open Targets

https://targetvalidation.org/

link between potential drug targets and diseases

pathDIP

http://ophid.utoronto.ca/pathDIP

Pathway datanalysis portal

SoyNet

http://www.inetbio.org/soynet/

Cofunctional network for soybean

TSTMP

http://tstmp.enzim.ttk.mta.hu

Target Selection Database for human transmembrane proteins

UniClust

http://uniclust.mmseqs.com/

Multiple alignment database

WERAM

http://weram.biocuckoo.org/

Histone acetylation and methylation database

 

 

 

 

Galperin M.Y. et al. (2017) The 24th Annual Nucleic Acid Research Database, Nucleic Acid Research, 45, D1-D11.


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